S. N. Malkowski, Atilho, R. M., Greenlee, E. B., weinberg, C., and Breaker, R. R., “A rare bacterial RNA motif is implicated in the regulation of the purF gene whose encoded enzyme synthesizes phosphoribosylamine”, RNA, 2020.
S. Stav, Atilho, R. M., G Arachchilage, M., Nguyen, G., Higgs, G., and Breaker, R. R., “Genome-wide discovery of structured noncoding RNAs in bacteria”, BMC Microbiology, vol. 19, no. 66, 2019.
M. G Arachchilage, Atilho, R. M., Stav, S., Higgs, G., and Breaker, R. R., “Genome-wide Discovery of Rare Riboswitches in Bacteria”, FASEB, vol. 33, 2019.
R. M. Atilho, G Arachchilage, M., Greenlee, E. B., Knecht, K. M., and Breaker, R. R., “A bacterial riboswitch class for the thiamin precursor HMP-PP employs a terminator-embedded aptamer”, eLife, 2019.
K. Perkins, Atilho, R. M., Moon, M. H., and Breaker, R. R., “Employing a ZTP Riboswitch to Detect Bacterial Folate Biosynthesis Inhibitors in a Small Molecule High-Throughput Screen”, ACS Chem. Biol., vol. 14, p. 9, 2019.
E. B. Greenlee, Stav, S., Atilho, R. M., Brewer, K. I., Harris, K. A., Malkowski, S. N., Mirihana-Arachchilage, G., Perkins, K., Sherlock, M. E., and Breaker, R. R., “Challenges of ligand identification for the second wave of orphan riboswitch candidates”, RNA Biol, vol. 15, no. 3, 2018.
S. Klahn, Bolay, P., Wright, P. R., Atilho, R. M., Brewer, K. I., Hagemann, M., Breaker, R. R., and Hess, W. R., “A glutamine riboswitch is a key element for the regulation of glutamine synthetase in cyanobacteria”, Nucleic Acids Research, 2018.
R. R. Breaker, Atilho, R. M., Malkowski, S. N., Nelson, J. W., and Sherlock, M. E., “The Biology of Free Guanidine As Revealed by Riboswitches”, Biochemistry, 2017.
J. W. Nelson, Atilho, R. M., Sherlock, M. E., Stockbridge, R. B., and Breaker, R. R., “Metabolism of Free Guanidine in Bacteria Is Regulated by a Widespread Riboswitch Class”, Mol Cell, 2016.