2003

W. C. Winkler, Nahvi, A., Sudarsan, N., Barrick, J. E., and Breaker, R. R., “An mRNA structure that controls gene expression by binding S-adenosylmethionine.”, Nat Struct Biol, vol. 10, no. 9, pp. 701-7, 2003. [PubMed]
W. C. Winkler and Breaker, R. R., “Genetic control by metabolite-binding riboswitches.”, Chembiochem, vol. 4, no. 10, pp. 1024-32, 2003. [PubMed]
N. Sudarsan, J Wickiser, K., Nakamura, S., Ebert, M. S., and Breaker, R. R., “An mRNA structure in bacteria that controls gene expression by binding lysine.”, Genes Dev, vol. 17, no. 21, pp. 2688-97, 2003. [PubMed]
M. Mandal, Boese, B., Barrick, J. E., Winkler, W. C., and Breaker, R. R., “Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria.”, Cell, vol. 113, no. 5, pp. 577-86, 2003. [PubMed]
D. Lazarev, Puskarz, I., and Breaker, R. R., “Substrate specificity and reaction kinetics of an X-motif ribozyme.”, RNA, vol. 9, no. 6, pp. 688-97, 2003. [PubMed]
N. Sudarsan, Barrick, J. E., and Breaker, R. R., “Metabolite-binding RNA domains are present in the genes of eukaryotes.”, RNA, vol. 9, no. 6, pp. 644-7, 2003. [PubMed]
G. Mitchell Emilsson, Nakamura, S., Roth, A., and Breaker, R. R., “Ribozyme speed limits.”, RNA, vol. 9, no. 8, pp. 907-18, 2003. [PubMed]
R. R. Breaker, Emilsson, G. Mitchell, Lazarev, D., Nakamura, S., Puskarz, I. J., Roth, A., and Sudarsan, N., “A common speed limit for RNA-cleaving ribozymes and deoxyribozymes.”, RNA, vol. 9, no. 8, pp. 949-57, 2003. [PubMed]

2002

A. Nahvi, Sudarsan, N., Ebert, M. S., Zou, X., Brown, K. L., and Breaker, R. R., “Genetic control by a metabolite binding mRNA.”, Chem Biol, vol. 9, no. 9, p. 1043, 2002. [PubMed]
W. Winkler, Nahvi, A., and Breaker, R. R., “Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression.”, Nature, vol. 419, no. 6910, pp. 952-6, 2002. [PubMed]
R. R. Breaker, “Engineered allosteric ribozymes as biosensor components.”, Curr Opin Biotechnol, vol. 13, no. 1, pp. 31-9, 2002. [PubMed]
W. C. Winkler, Cohen-Chalamish, S., and Breaker, R. R., “An mRNA structure that controls gene expression by binding FMN.”, Proc Natl Acad Sci U S A, vol. 99, no. 25, pp. 15908-13, 2002. [PubMed]
G. M. Emilsson and Breaker, R. R., “Deoxyribozymes: new activities and new applications.”, Cell Mol Life Sci, vol. 59, no. 4, pp. 596-607, 2002. [PubMed]

2001

N. Carmi and Breaker, R. R., “Characterization of a DNA-cleaving deoxyribozyme.”, Bioorg Med Chem, vol. 9, no. 10, pp. 2589-600, 2001. [PubMed]
R. R. Breaker, “Selection for catalytic function with nucleic acids.”, Curr Protoc Nucleic Acid Chem, vol. Chapter 9, p. Unit 9.4, 2001. [PubMed]
Y. Li and Breaker, R. R., “In vitro selection of kinase and ligase deoxyribozymes.”, Methods, vol. 23, no. 2, pp. 179-90, 2001. [PubMed]
A. M. Jose, Soukup, G. A., and Breaker, R. R., “Cooperative binding of effectors by an allosteric ribozyme.”, Nucleic Acids Res, vol. 29, no. 7, pp. 1631-7, 2001. [PubMed]
S. Seetharaman, Zivarts, M., Sudarsan, N., and Breaker, R. R., “Immobilized RNA switches for the analysis of complex chemical and biological mixtures.”, Nat Biotechnol, vol. 19, no. 4, pp. 336-41, 2001. [PubMed]
G. A. Soukup, DeRose, E. C., Koizumi, M., and Breaker, R. R., “Generating new ligand-binding RNAs by affinity maturation and disintegration of allosteric ribozymes.”, RNA, vol. 7, no. 4, pp. 524-36, 2001. [PubMed]

2000

J. Tang and Breaker, R. R., “Structural diversity of self-cleaving ribozymes.”, Proc Natl Acad Sci U S A, vol. 97, no. 11, pp. 5784-9, 2000. [PubMed]

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