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K. I. Brewer, Greenlee, E. B., Higgs, G., Yu, D., G Arachchilage, M., Chen, X., King, N., White, N., and Breaker, R. R., “Comprehensive discovery of novel structured noncoding RNAs in 26 bacterial genomes”, RNA Biol, 2021.
K. I. Brewer, Gaffield, G. J., Puri, M., and Breaker, R. R., “DIMPL: a bioinformatics pipeline for the discovery of structured noncoding RNA motifs in bacteria”, Bioinformatics, 2021.
E. B. Greenlee, Stav, S., Atilho, R. M., Brewer, K. I., Harris, K. A., Malkowski, S. N., Mirihana-Arachchilage, G., Perkins, K., Sherlock, M. E., and Breaker, R. R., “Challenges of ligand identification for the second wave of orphan riboswitch candidates”, RNA Biol, vol. 15, no. 3, 2018.
S. Klahn, Bolay, P., Wright, P. R., Atilho, R. M., Brewer, K. I., Hagemann, M., Breaker, R. R., and Hess, W. R., “A glutamine riboswitch is a key element for the regulation of glutamine synthetase in cyanobacteria”, Nucleic Acids Research, 2018.
K. A. Harris, Lünse, C. E., Li, S., Brewer, K. I., and Breaker, R. R., “Biochemical analysis of pistol self-cleaving ribozymes.”, RNA, 2015.

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