A. Roth, Weinberg, Z., Vanderschuren, K., Murdock, M. H., and Breaker, R. R., “Natural circularly permuted group II introns in bacteria produce RNA circles”, iScience, vol. 24, no. 12, 2021.
Z. Weinberg, Lünse, C. E., Corbino, K., Ames, T. D., Nelson, J. W., Roth, A., Perkins, K., Sherlock, M. E., and Breaker, R. R., “Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions”, Nucleic Acids Research, 2017.
A. Roth, Weinberg, Z., G Y Chen, A., Kim, P. B., Ames, T. D., and Breaker, R. R., “A widespread self-cleaving ribozyme class is revealed by bioinformatics.”, Nat Chem Biol, vol. 10, no. 1, pp. 56-60, 2014.
J. L. Baker, Sudarsan, N., Weinberg, Z., Roth, A., Stockbridge, R. B., and Breaker, R. R., “Widespread genetic switches and toxicity resistance proteins for fluoride.”, Science, vol. 335, no. 6065, pp. 233-5, 2012.
P. J. McCown, Roth, A., and Breaker, R. R., “An expanded collection and refined consensus model of glmS ribozymes.”, RNA, vol. 17, no. 4, pp. 728-36, 2011.
J. Perreault, Weinberg, Z., Roth, A., Popescu, O., Chartrand, P., Ferbeyre, G., and Breaker, R. R., “Identification of hammerhead ribozymes in all domains of life reveals novel structural variations.”, PLoS Comput Biol, vol. 7, no. 5, p. e1002031, 2011.
M. M. Meyer, Hammond, M. C., Salinas, Y., Roth, A., Sudarsan, N., and Breaker, R. R., “Challenges of ligand identification for riboswitch candidates.”, RNA Biol, vol. 8, no. 1, pp. 5-10, 2011.
B. J. Parker, Moltke, I., Roth, A., Washietl, S., Wen, J., Kellis, M., Breaker, R., and Pedersen, J. Skou, “New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes.”, Genome Res, vol. 21, no. 11, pp. 1929-43, 2011.
A. Roth and Breaker, R. R., “The structural and functional diversity of metabolite-binding riboswitches.”, Annu Rev Biochem, vol. 78, pp. 305-34, 2009.
M. M. Meyer, Roth, A., Chervin, S. M., Garcia, G. A., and Breaker, R. R., “Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria.”, RNA, vol. 14, no. 4, pp. 685-95, 2008.

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