Z. Weinberg and Breaker, R. R., “R2R--software to speed the depiction of aesthetic consensus RNA secondary structures.”, BMC Bioinformatics, vol. 12, p. 3, 2011.
J. Perreault, Weinberg, Z., Roth, A., Popescu, O., Chartrand, P., Ferbeyre, G., and Breaker, R. R., “Identification of hammerhead ribozymes in all domains of life reveals novel structural variations.”, PLoS Comput Biol, vol. 7, no. 5, p. e1002031, 2011.
T. D. Ames, Rodionov, D. A., Weinberg, Z., and Breaker, R. R., “A eubacterial riboswitch class that senses the coenzyme tetrahydrofolate.”, Chem Biol, vol. 17, no. 7, pp. 681-5, 2010.
Z. Weinberg, Wang, J. X., Bogue, J., Yang, J., Corbino, K., Moy, R. H., and Breaker, R. R., “Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes.”, Genome Biol, vol. 11, no. 3, p. R31, 2010.
E. R. Lee, Baker, J. L., Weinberg, Z., Sudarsan, N., and Breaker, R. R., “An allosteric self-splicing ribozyme triggered by a bacterial second messenger.”, Science, vol. 329, no. 5993, pp. 845-8, 2010.
Z. Weinberg, Perreault, J., Meyer, M. M., and Breaker, R. R., “Exceptional structured noncoding RNAs revealed by bacterial metagenome analysis.”, Nature, vol. 462, no. 7273, pp. 656-9, 2009.
M. M. Meyer, Ames, T. D., Smith, D. P., Weinberg, Z., Schwalbach, M. S., Giovannoni, S. J., and Breaker, R. R., “Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'.”, BMC Genomics, vol. 10, p. 268, 2009.
H. - H. Tseng, Weinberg, Z., Gore, J., Breaker, R. R., and Ruzzo, W. L., “Finding non-coding RNAs through genome-scale clustering.”, J Bioinform Comput Biol, vol. 7, no. 2, pp. 373-88, 2009.
Z. Weinberg, Regulski, E. E., Hammond, M. C., Barrick, J. E., Yao, Z., Ruzzo, W. L., and Breaker, R. R., “The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches.”, RNA, vol. 14, no. 5, pp. 822-8, 2008.
E. E. Regulski, Moy, R. H., Weinberg, Z., Barrick, J. E., Yao, Z., Ruzzo, W. L., and Breaker, R. R., “A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism.”, Mol Microbiol, vol. 68, no. 4, pp. 918-32, 2008.

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