2006

K. Blount, Puskarz, I., Penchovsky, R., and Breaker, R., “Development and application of a high-throughput assay for glmS riboswitch activators.”, RNA Biol, vol. 3, no. 2, pp. 77-81, 2006. [PubMed]
A. Roth, Nahvi, A., Lee, M., Jona, I., and Breaker, R. R., “Characteristics of the glmS ribozyme suggest only structural roles for divalent metal ions.”, RNA, vol. 12, no. 4, pp. 607-19, 2006. [PubMed]
K. H. Link, Guo, L., and Breaker, R. R., “Examination of the structural and functional versatility of glmS ribozymes by using in vitro selection.”, Nucleic Acids Res, vol. 34, no. 17, pp. 4968-75, 2006. [PubMed]
J. N. Kim and Breaker, R. R., “Riboswitches: Regulators of modern and ancient metabolism”, Biochemist, vol. 28, no. 2, 2006.
R. R. Breaker, “Genetic control by riboswitches and ribozymes”, Faseb Journal, vol. 20, no. 4, 2006.

2005

K. J Wickiser, Cheah, M. T., Breaker, R. R., and Crothers, D. M., “The kinetics of ligand binding by an adenine-sensing riboswitch.”, Biochemistry, vol. 44, no. 40, pp. 13404-14, 2005. [PubMed]
R. Penchovsky and Breaker, R. R., “Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes.”, Nat Biotechnol, vol. 23, no. 11, pp. 1424-33, 2005. [PubMed]
J. E. Barrick, Sudarsan, N., Weinberg, Z., Ruzzo, W. L., and Breaker, R. R., “6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter.”, RNA, vol. 11, no. 5, pp. 774-84, 2005. [PubMed]
B. J. Tucker and Breaker, R. R., “Riboswitches as versatile gene control elements.”, Curr Opin Struct Biol, vol. 15, no. 3, pp. 342-8, 2005. [PubMed]
N. Sudarsan, Cohen-Chalamish, S., Nakamura, S., Emilsson, G. Mitchell, and Breaker, R. R., “Thiamine pyrophosphate riboswitches are targets for the antimicrobial compound pyrithiamine.”, Chem Biol, vol. 12, no. 12, pp. 1325-35, 2005. [PubMed]
K. J Wickiser, Winkler, W. C., Breaker, R. R., and Crothers, D. M., “The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch.”, Mol Cell, vol. 18, no. 1, pp. 49-60, 2005. [PubMed]
K. A. Corbino, Barrick, J. E., Lim, J., Welz, R., Tucker, B. J., Puskarz, I., Mandal, M., Rudnick, N. D., and Breaker, R. R., “Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria.”, Genome Biol, vol. 6, no. 8, p. R70, 2005. [PubMed]
W. C. Winkler and Breaker, R. R., “Regulation of bacterial gene expression by riboswitches.”, Annu Rev Microbiol, vol. 59, pp. 487-517, 2005. [PubMed]
M. Zivarts, Liu, Y., and Breaker, R. R., “Engineered allosteric ribozymes that respond to specific divalent metal ions.”, Nucleic Acids Res, vol. 33, no. 2, pp. 622-31, 2005. [PubMed]
R. R. Breaker, “Gene expression control - Harnessing RNA switches”, Gene Therapy, vol. 12, no. 9, 2005.

2004

M. Mandal, Lee, M., Barrick, J. E., Weinberg, Z., Emilsson, G. Mitchell, Ruzzo, W. L., and Breaker, R. R., “A glycine-dependent riboswitch that uses cooperative binding to control gene expression.”, Science, vol. 306, no. 5694, pp. 275-9, 2004. [PubMed]
A. Sreedhara, Li, Y., and Breaker, R. R., “Ligating DNA with DNA.”, J Am Chem Soc, vol. 126, no. 11, pp. 3454-60, 2004. [PubMed]
W. C. Winkler, Nahvi, A., Roth, A., Collins, J. A., and Breaker, R. R., “Control of gene expression by a natural metabolite-responsive ribozyme.”, Nature, vol. 428, no. 6980, pp. 281-6, 2004. [PubMed]
M. Mandal and Breaker, R. R., “Gene regulation by riboswitches.”, Nat Rev Mol Cell Biol, vol. 5, no. 6, pp. 451-63, 2004. [PubMed]
M. Mandal and Breaker, R. R., “Adenine riboswitches and gene activation by disruption of a transcription terminator.”, Nat Struct Mol Biol, vol. 11, no. 1, pp. 29-35, 2004. [PubMed]

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