2001

Y. Li and Breaker, R. R., “In vitro selection of kinase and ligase deoxyribozymes.”, Methods, vol. 23, no. 2, pp. 179-90, 2001. [PubMed]
A. M. Jose, Soukup, G. A., and Breaker, R. R., “Cooperative binding of effectors by an allosteric ribozyme.”, Nucleic Acids Res, vol. 29, no. 7, pp. 1631-7, 2001. [PubMed]
S. Seetharaman, Zivarts, M., Sudarsan, N., and Breaker, R. R., “Immobilized RNA switches for the analysis of complex chemical and biological mixtures.”, Nat Biotechnol, vol. 19, no. 4, pp. 336-41, 2001. [PubMed]
G. A. Soukup, DeRose, E. C., Koizumi, M., and Breaker, R. R., “Generating new ligand-binding RNAs by affinity maturation and disintegration of allosteric ribozymes.”, RNA, vol. 7, no. 4, pp. 524-36, 2001. [PubMed]

2000

J. Tang and Breaker, R. R., “Structural diversity of self-cleaving ribozymes.”, Proc Natl Acad Sci U S A, vol. 97, no. 11, pp. 5784-9, 2000. [PubMed]
G. A. Soukup, Emilsson, G. A., and Breaker, R. R., “Altering molecular recognition of RNA aptamers by allosteric selection.”, J Mol Biol, vol. 298, no. 4, pp. 623-32, 2000. [PubMed]
Y. Li, Liu, Y., and Breaker, R. R., “Capping DNA with DNA.”, Biochemistry, vol. 39, no. 11, pp. 3106-14, 2000. [PubMed]
G. A. Soukup and Breaker, R. R., “Allosteric nucleic acid catalysts.”, Curr Opin Struct Biol, vol. 10, no. 3, pp. 318-25, 2000. [PubMed]
R. R. Breaker, “Tech.Sight. Molecular biology. Making catalytic DNAs.”, Science, vol. 290, no. 5499, pp. 2095-6, 2000. [PubMed]
M. Koizumi and Breaker, R. R., “Molecular recognition of cAMP by an RNA aptamer.”, Biochemistry, vol. 39, no. 30, pp. 8983-92, 2000. [PubMed]
R. R. Breaker, “Engineering RNA and DNA biocatalysts”, Abstracts of Papers of the American Chemical Society, vol. 219, 2000.

1999

G. A. Soukup and Breaker, R. R., “Relationship between internucleotide linkage geometry and the stability of RNA.”, RNA, vol. 5, no. 10, pp. 1308-25, 1999. [PubMed]
M. Koizumi, Soukup, G. A., Kerr, J. N., and Breaker, R. R., “Allosteric selection of ribozymes that respond to the second messengers cGMP and cAMP.”, Nat Struct Biol, vol. 6, no. 11, pp. 1062-71, 1999. [PubMed]
R. R. Breaker, “Catalytic DNA: in training and seeking employment.”, Nat Biotechnol, vol. 17, no. 5, pp. 422-3, 1999. [PubMed]
G. A. Soukup and Breaker, R. R., “Engineering precision RNA molecular switches.”, Proc Natl Acad Sci U S A, vol. 96, no. 7, pp. 3584-9, 1999. [PubMed]
Y. Li and Breaker, R. R., “Phosphorylating DNA with DNA.”, Proc Natl Acad Sci U S A, vol. 96, no. 6, pp. 2746-51, 1999. [PubMed]
Y. Li and Breaker, R. R., “Deoxyribozymes: new players in the ancient game of biocatalysis.”, Curr Opin Struct Biol, vol. 9, no. 3, pp. 315-23, 1999. [PubMed]
G. A. Soukup and Breaker, R. R., “Design of allosteric hammerhead ribozymes activated by ligand-induced structure stabilization.”, Structure, vol. 7, no. 7, pp. 783-91, 1999. [PubMed]
G. A. Soukup and Breaker, R. R., “Nucleic acid molecular switches.”, Trends Biotechnol, vol. 17, no. 12, pp. 469-76, 1999. [PubMed]
M. Kurz and Breaker, R. R., “In vitro selection of nucleic acid enzymes.”, Curr Top Microbiol Immunol, vol. 243, pp. 137-58, 1999. [PubMed]

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