2009

Z. Weinberg, Perreault, J., Meyer, M. M., and Breaker, R. R., “Exceptional structured noncoding RNAs revealed by bacterial metagenome analysis.”, Nature, vol. 462, no. 7273, pp. 656-9, 2009. [PubMed]
K. D. Smith, Lipchock, S. V., Ames, T. D., Wang, J., Breaker, R. R., and Strobel, S. A., “Structural basis of ligand binding by a c-di-GMP riboswitch.”, Nat Struct Mol Biol, vol. 16, no. 12, pp. 1218-23, 2009. [PubMed]
E. R. Lee, Blount, K. F., and Breaker, R. R., “Roseoflavin is a natural antibacterial compound that binds to FMN riboswitches and regulates gene expression.”, RNA Biol, vol. 6, no. 2, pp. 187-94, 2009. [PubMed]
H. - H. Tseng, Weinberg, Z., Gore, J., Breaker, R. R., and Ruzzo, W. L., “Finding non-coding RNAs through genome-scale clustering.”, J Bioinform Comput Biol, vol. 7, no. 2, pp. 373-88, 2009. [PubMed]
M. M. Meyer, Ames, T. D., Smith, D. P., Weinberg, Z., Schwalbach, M. S., Giovannoni, S. J., and Breaker, R. R., “Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'.”, BMC Genomics, vol. 10, p. 268, 2009. [PubMed]
K. H. Link and Breaker, R. R., “In vitro selection of glmS ribozymes.”, Methods Mol Biol, vol. 540, pp. 349-64, 2009. [PubMed]
A. Roth and Breaker, R. R., “The structural and functional diversity of metabolite-binding riboswitches.”, Annu Rev Biochem, vol. 78, pp. 305-34, 2009. [PubMed]

2008

E. E. Regulski, Moy, R. H., Weinberg, Z., Barrick, J. E., Yao, Z., Ruzzo, W. L., and Breaker, R. R., “A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism.”, Mol Microbiol, vol. 68, no. 4, pp. 918-32, 2008. [PubMed]
Z. Weinberg, Regulski, E. E., Hammond, M. C., Barrick, J. E., Yao, Z., Ruzzo, W. L., and Breaker, R. R., “The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches.”, RNA, vol. 14, no. 5, pp. 822-8, 2008. [PubMed]
J. Xin Wang, Lee, E. R., Morales, D. Rivera, Lim, J., and Breaker, R. R., “Riboswitches that sense S-adenosylhomocysteine and activate genes involved in coenzyme recycling.”, Mol Cell, vol. 29, no. 6, pp. 691-702, 2008. [PubMed]
R. R. Breaker, “Complex riboswitches.”, Science, vol. 319, no. 5871, pp. 1795-7, 2008. [PubMed]
N. Sudarsan, Lee, E. R., Weinberg, Z., Moy, R. H., Kim, J. N., Link, K. H., and Breaker, R. R., “Riboswitches in eubacteria sense the second messenger cyclic di-GMP.”, Science, vol. 321, no. 5887, pp. 411-3, 2008. [PubMed]
J. N. Kim and Breaker, R. R., “Purine sensing by riboswitches.”, Biol Cell, vol. 100, no. 1, pp. 1-11, 2008. [PubMed]
B. J. Boese, Corbino, K., and Breaker, R. R., “In vitro selection and characterization of cellulose-binding RNA aptamers using isothermal amplification.”, Nucleosides Nucleotides Nucleic Acids, vol. 27, no. 8, pp. 949-66, 2008. [PubMed]
M. M. Meyer, Roth, A., Chervin, S. M., Garcia, G. A., and Breaker, R. R., “Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria.”, RNA, vol. 14, no. 4, pp. 685-95, 2008. [PubMed]
J. Xin Wang and Breaker, R. R., “Riboswitches that sense S-adenosylmethionine and S-adenosylhomocysteine.”, Biochem Cell Biol, vol. 86, no. 2, pp. 157-68, 2008. [PubMed]
E. E. Regulski and Breaker, R. R., “In-line probing analysis of riboswitches.”, Methods Mol Biol, vol. 419, pp. 53-67, 2008. [PubMed]

2007

J. N. Kim, Roth, A., and Breaker, R. R., “Guanine riboswitch variants from Mesoplasma florum selectively recognize 2'-deoxyguanosine.”, Proc Natl Acad Sci U S A, vol. 104, no. 41, pp. 16092-7, 2007. [PubMed]
A. Wachter, Tunc-Ozdemir, M., Grove, B. C., Green, P. J., Shintani, D. K., and Breaker, R. R., “Riboswitch control of gene expression in plants by splicing and alternative 3' end processing of mRNAs.”, Plant Cell, vol. 19, no. 11, pp. 3437-50, 2007. [PubMed]
E. Stern, Wagner, R., Sigworth, F. J., Breaker, R., Fahmy, T. M., and Reed, M. A., “Importance of the Debye screening length on nanowire field effect transistor sensors.”, Nano Lett, vol. 7, no. 11, pp. 3405-9, 2007. [PubMed]

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