2008

N. Sudarsan, Lee, E. R., Weinberg, Z., Moy, R. H., Kim, J. N., Link, K. H., and Breaker, R. R., “Riboswitches in eubacteria sense the second messenger cyclic di-GMP.”, Science, vol. 321, no. 5887, pp. 411-3, 2008. [PubMed]
J. N. Kim and Breaker, R. R., “Purine sensing by riboswitches.”, Biol Cell, vol. 100, no. 1, pp. 1-11, 2008. [PubMed]
B. J. Boese, Corbino, K., and Breaker, R. R., “In vitro selection and characterization of cellulose-binding RNA aptamers using isothermal amplification.”, Nucleosides Nucleotides Nucleic Acids, vol. 27, no. 8, pp. 949-66, 2008. [PubMed]
M. M. Meyer, Roth, A., Chervin, S. M., Garcia, G. A., and Breaker, R. R., “Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria.”, RNA, vol. 14, no. 4, pp. 685-95, 2008. [PubMed]
J. Xin Wang and Breaker, R. R., “Riboswitches that sense S-adenosylmethionine and S-adenosylhomocysteine.”, Biochem Cell Biol, vol. 86, no. 2, pp. 157-68, 2008. [PubMed]
E. E. Regulski and Breaker, R. R., “In-line probing analysis of riboswitches.”, Methods Mol Biol, vol. 419, pp. 53-67, 2008. [PubMed]

2007

J. N. Kim, Roth, A., and Breaker, R. R., “Guanine riboswitch variants from Mesoplasma florum selectively recognize 2'-deoxyguanosine.”, Proc Natl Acad Sci U S A, vol. 104, no. 41, pp. 16092-7, 2007. [PubMed]
A. Wachter, Tunc-Ozdemir, M., Grove, B. C., Green, P. J., Shintani, D. K., and Breaker, R. R., “Riboswitch control of gene expression in plants by splicing and alternative 3' end processing of mRNAs.”, Plant Cell, vol. 19, no. 11, pp. 3437-50, 2007. [PubMed]
E. Stern, Wagner, R., Sigworth, F. J., Breaker, R., Fahmy, T. M., and Reed, M. A., “Importance of the Debye screening length on nanowire field effect transistor sensors.”, Nano Lett, vol. 7, no. 11, pp. 3405-9, 2007. [PubMed]
M. T. Cheah, Wachter, A., Sudarsan, N., and Breaker, R. R., “Control of alternative RNA splicing and gene expression by eukaryotic riboswitches.”, Nature, vol. 447, no. 7143, pp. 497-500, 2007. [PubMed]
Z. Yao, Barrick, J., Weinberg, Z., Neph, S., Breaker, R., Tompa, M., and Ruzzo, W. L., “A computational pipeline for high- throughput discovery of cis-regulatory noncoding RNA in prokaryotes.”, PLoS Comput Biol, vol. 3, no. 7, p. e126, 2007. [PubMed]
K. F. Blount, Wang, J. Xin, Lim, J., Sudarsan, N., and Breaker, R. R., “Antibacterial lysine analogs that target lysine riboswitches.”, Nat Chem Biol, vol. 3, no. 1, pp. 44-9, 2007. [PubMed]
K. H. Link, Guo, L., Ames, T. D., Yen, L., Mulligan, R. C., and Breaker, R. R., “Engineering high-speed allosteric hammerhead ribozymes.”, Biol Chem, vol. 388, no. 8, pp. 779-86, 2007. [PubMed]
A. Roth, Winkler, W. C., Regulski, E. E., Lee, B. W. K., Lim, J., Jona, I., Barrick, J. E., Ritwik, A., Kim, J. N., Welz, R., Iwata-Reuyl, D., and Breaker, R. R., “A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain.”, Nat Struct Mol Biol, vol. 14, no. 4, pp. 308-17, 2007. [PubMed]
R. Welz and Breaker, R. R., “Ligand binding and gene control characteristics of tandem riboswitches in Bacillus anthracis.”, RNA, vol. 13, no. 4, pp. 573-82, 2007. [PubMed]
Z. Weinberg, Barrick, J. E., Yao, Z., Roth, A., Kim, J. N., Gore, J., Wang, J. Xin, Lee, E. R., Block, K. F., Sudarsan, N., Neph, S., Tompa, M., Ruzzo, W. L., and Breaker, R. R., “Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline.”, Nucleic Acids Res, vol. 35, no. 14, pp. 4809-19, 2007. [PubMed]
J. E. Barrick and Breaker, R. R., “The distributions, mechanisms, and structures of metabolite-binding riboswitches.”, Genome Biol, vol. 8, no. 11, p. R239, 2007. [PubMed]
B. J. Boese and Breaker, R. R., “In vitro selection and characterization of cellulose-binding DNA aptamers.”, Nucleic Acids Res, vol. 35, no. 19, pp. 6378-88, 2007. [PubMed]
J. Barrick and Breaker, R. R., “The Power of Riboswitches”, Scientific American, 2007. [Link]

2006

J. Lim, Grove, B. C., Roth, A., and Breaker, R. R., “Characteristics of ligand recognition by a glmS self-cleaving ribozyme.”, Angew Chem Int Ed Engl, vol. 45, no. 40, pp. 6689-93, 2006. [PubMed]

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