2008

E. E. Regulski and Breaker, R. R., “In-line probing analysis of riboswitches.”, Methods Mol Biol, vol. 419, pp. 53-67, 2008. [PubMed]

2007

J. N. Kim, Roth, A., and Breaker, R. R., “Guanine riboswitch variants from Mesoplasma florum selectively recognize 2'-deoxyguanosine.”, Proc Natl Acad Sci U S A, vol. 104, no. 41, pp. 16092-7, 2007. [PubMed]
A. Wachter, Tunc-Ozdemir, M., Grove, B. C., Green, P. J., Shintani, D. K., and Breaker, R. R., “Riboswitch control of gene expression in plants by splicing and alternative 3' end processing of mRNAs.”, Plant Cell, vol. 19, no. 11, pp. 3437-50, 2007. [PubMed]
E. Stern, Wagner, R., Sigworth, F. J., Breaker, R., Fahmy, T. M., and Reed, M. A., “Importance of the Debye screening length on nanowire field effect transistor sensors.”, Nano Lett, vol. 7, no. 11, pp. 3405-9, 2007. [PubMed]
M. T. Cheah, Wachter, A., Sudarsan, N., and Breaker, R. R., “Control of alternative RNA splicing and gene expression by eukaryotic riboswitches.”, Nature, vol. 447, no. 7143, pp. 497-500, 2007. [PubMed]
Z. Yao, Barrick, J., Weinberg, Z., Neph, S., Breaker, R., Tompa, M., and Ruzzo, W. L., “A computational pipeline for high- throughput discovery of cis-regulatory noncoding RNA in prokaryotes.”, PLoS Comput Biol, vol. 3, no. 7, p. e126, 2007. [PubMed]
K. F. Blount, Wang, J. Xin, Lim, J., Sudarsan, N., and Breaker, R. R., “Antibacterial lysine analogs that target lysine riboswitches.”, Nat Chem Biol, vol. 3, no. 1, pp. 44-9, 2007. [PubMed]
K. H. Link, Guo, L., Ames, T. D., Yen, L., Mulligan, R. C., and Breaker, R. R., “Engineering high-speed allosteric hammerhead ribozymes.”, Biol Chem, vol. 388, no. 8, pp. 779-86, 2007. [PubMed]
A. Roth, Winkler, W. C., Regulski, E. E., Lee, B. W. K., Lim, J., Jona, I., Barrick, J. E., Ritwik, A., Kim, J. N., Welz, R., Iwata-Reuyl, D., and Breaker, R. R., “A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain.”, Nat Struct Mol Biol, vol. 14, no. 4, pp. 308-17, 2007. [PubMed]
R. Welz and Breaker, R. R., “Ligand binding and gene control characteristics of tandem riboswitches in Bacillus anthracis.”, RNA, vol. 13, no. 4, pp. 573-82, 2007. [PubMed]
J. E. Barrick and Breaker, R. R., “The distributions, mechanisms, and structures of metabolite-binding riboswitches.”, Genome Biol, vol. 8, no. 11, p. R239, 2007. [PubMed]
B. J. Boese and Breaker, R. R., “In vitro selection and characterization of cellulose-binding DNA aptamers.”, Nucleic Acids Res, vol. 35, no. 19, pp. 6378-88, 2007. [PubMed]
Z. Weinberg, Barrick, J. E., Yao, Z., Roth, A., Kim, J. N., Gore, J., Wang, J. Xin, Lee, E. R., Block, K. F., Sudarsan, N., Neph, S., Tompa, M., Ruzzo, W. L., and Breaker, R. R., “Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline.”, Nucleic Acids Res, vol. 35, no. 14, pp. 4809-19, 2007. [PubMed]
J. Barrick and Breaker, R. R., “The Power of Riboswitches”, Scientific American, 2007. [Link]

2006

N. Sudarsan, Hammond, M. C., Block, K. F., Welz, R., Barrick, J. E., Roth, A., and Breaker, R. R., “Tandem riboswitch architectures exhibit complex gene control functions.”, Science, vol. 314, no. 5797, pp. 300-4, 2006. [PubMed]
J. Lim, Grove, B. C., Roth, A., and Breaker, R. R., “Characteristics of ligand recognition by a glmS self-cleaving ribozyme.”, Angew Chem Int Ed Engl, vol. 45, no. 40, pp. 6689-93, 2006. [PubMed]
A. Serganov, Polonskaia, A., Phan, A. Tuân, Breaker, R. R., and Patel, D. J., “Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch.”, Nature, vol. 441, no. 7097, pp. 1167-71, 2006. [PubMed]
J. Lim, Winkler, W. C., Nakamura, S., Scott, V., and Breaker, R. R., “Molecular-recognition characteristics of SAM-binding riboswitches.”, Angew Chem Int Ed Engl, vol. 45, no. 6, pp. 964-8, 2006. [PubMed]
E. Puerta-Fernandez, Barrick, J. E., Roth, A., and Breaker, R. R., “Identification of a large noncoding RNA in extremophilic eubacteria.”, Proc Natl Acad Sci U S A, vol. 103, no. 51, pp. 19490-5, 2006. [PubMed]
K. F. Blount and Breaker, R. R., “Riboswitches as antibacterial drug targets.”, Nat Biotechnol, vol. 24, no. 12, pp. 1558-64, 2006. [PubMed]

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