2004

M. Mandal and Breaker, R. R., “An mRNA structure that differentially controls gene expression by binding guanine or adenine”, Biophysical Journal, vol. 86, no. 1, 2004.

2003

W. C. Winkler, Nahvi, A., Sudarsan, N., Barrick, J. E., and Breaker, R. R., “An mRNA structure that controls gene expression by binding S-adenosylmethionine.”, Nat Struct Biol, vol. 10, no. 9, pp. 701-7, 2003. [PubMed]
W. C. Winkler and Breaker, R. R., “Genetic control by metabolite-binding riboswitches.”, Chembiochem, vol. 4, no. 10, pp. 1024-32, 2003. [PubMed]
N. Sudarsan, J Wickiser, K., Nakamura, S., Ebert, M. S., and Breaker, R. R., “An mRNA structure in bacteria that controls gene expression by binding lysine.”, Genes Dev, vol. 17, no. 21, pp. 2688-97, 2003. [PubMed]
M. Mandal, Boese, B., Barrick, J. E., Winkler, W. C., and Breaker, R. R., “Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria.”, Cell, vol. 113, no. 5, pp. 577-86, 2003. [PubMed]
D. Lazarev, Puskarz, I., and Breaker, R. R., “Substrate specificity and reaction kinetics of an X-motif ribozyme.”, RNA, vol. 9, no. 6, pp. 688-97, 2003. [PubMed]
N. Sudarsan, Barrick, J. E., and Breaker, R. R., “Metabolite-binding RNA domains are present in the genes of eukaryotes.”, RNA, vol. 9, no. 6, pp. 644-7, 2003. [PubMed]
G. Mitchell Emilsson, Nakamura, S., Roth, A., and Breaker, R. R., “Ribozyme speed limits.”, RNA, vol. 9, no. 8, pp. 907-18, 2003. [PubMed]
R. R. Breaker, Emilsson, G. Mitchell, Lazarev, D., Nakamura, S., Puskarz, I. J., Roth, A., and Sudarsan, N., “A common speed limit for RNA-cleaving ribozymes and deoxyribozymes.”, RNA, vol. 9, no. 8, pp. 949-57, 2003. [PubMed]

2002

A. Nahvi, Sudarsan, N., Ebert, M. S., Zou, X., Brown, K. L., and Breaker, R. R., “Genetic control by a metabolite binding mRNA.”, Chem Biol, vol. 9, no. 9, p. 1043, 2002. [PubMed]
W. Winkler, Nahvi, A., and Breaker, R. R., “Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression.”, Nature, vol. 419, no. 6910, pp. 952-6, 2002. [PubMed]
R. R. Breaker, “Engineered allosteric ribozymes as biosensor components.”, Curr Opin Biotechnol, vol. 13, no. 1, pp. 31-9, 2002. [PubMed]
W. C. Winkler, Cohen-Chalamish, S., and Breaker, R. R., “An mRNA structure that controls gene expression by binding FMN.”, Proc Natl Acad Sci U S A, vol. 99, no. 25, pp. 15908-13, 2002. [PubMed]
G. M. Emilsson and Breaker, R. R., “Deoxyribozymes: new activities and new applications.”, Cell Mol Life Sci, vol. 59, no. 4, pp. 596-607, 2002. [PubMed]

2001

N. Carmi and Breaker, R. R., “Characterization of a DNA-cleaving deoxyribozyme.”, Bioorg Med Chem, vol. 9, no. 10, pp. 2589-600, 2001. [PubMed]
R. R. Breaker, “Selection for catalytic function with nucleic acids.”, Curr Protoc Nucleic Acid Chem, vol. Chapter 9, p. Unit 9.4, 2001. [PubMed]
Y. Li and Breaker, R. R., “In vitro selection of kinase and ligase deoxyribozymes.”, Methods, vol. 23, no. 2, pp. 179-90, 2001. [PubMed]
A. M. Jose, Soukup, G. A., and Breaker, R. R., “Cooperative binding of effectors by an allosteric ribozyme.”, Nucleic Acids Res, vol. 29, no. 7, pp. 1631-7, 2001. [PubMed]
S. Seetharaman, Zivarts, M., Sudarsan, N., and Breaker, R. R., “Immobilized RNA switches for the analysis of complex chemical and biological mixtures.”, Nat Biotechnol, vol. 19, no. 4, pp. 336-41, 2001. [PubMed]
G. A. Soukup, DeRose, E. C., Koizumi, M., and Breaker, R. R., “Generating new ligand-binding RNAs by affinity maturation and disintegration of allosteric ribozymes.”, RNA, vol. 7, no. 4, pp. 524-36, 2001. [PubMed]

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