2016

C. E. Lünse, Weinberg, Z., and Breaker, R. R., “Numerous small hammerhead ribozyme variants associated with Penelope-like retrotransposons cleave RNA as dimers”, RNA Biol, 2016. [Link]
K. M. Ruff, Muhamham, A., McCown, P. J., Breaker, R. R., and Strobel, S. A., “Singlet glycine riboswitches bind ligand as well as tandem riboswitches”, RNA, vol. 22, no. 11, p. 10, 2016. [Link]

2015

K. A. Harris, Lünse, C. E., Li, S., Brewer, K. I., and Breaker, R. R., “Biochemical analysis of pistol self-cleaving ribozymes.”, RNA, 2015. [PubMed]
S. Li, Lünse, C. E., Harris, K. A., and Breaker, R. R., “Biochemical analysis of hatchet self-cleaving ribozymes.”, RNA, 2015. [PubMed]
K. F. Blount, Megyola, C., Plummer, M., Osterman, D., O'Connell, T., Aristoff, P., Quinn, C., R Chrusciel, A., Poel, T. J., Schostarez, H. J., Stewart, C. A., Walker, D. P., Wuts, P. G. M., and Breaker, R. R., “Novel Riboswitch-Binding Flavin Analog That Protects Mice against Clostridium difficile Infection without Inhibiting Cecal Flora.”, Antimicrob Agents Chemother, vol. 59, no. 9, pp. 5736-46, 2015. [PubMed]
K. Furukawa, Ramesh, A., Zhou, Z., Weinberg, Z., Vallery, T., Winkler, W. C., and Breaker, R. R., “Bacterial riboswitches cooperatively bind ni(2+) or co(2+) ions and control expression of heavy metal transporters.”, Mol Cell, vol. 57, no. 6, pp. 1088-98, 2015. [PubMed]
P. B. Kim, Nelson, J. W., and Breaker, R. R., “An ancient riboswitch class in bacteria regulates purine biosynthesis and one-carbon metabolism.”, Mol Cell, vol. 57, no. 2, pp. 317-28, 2015. [PubMed]
Z. Weinberg, Kim, P. B., Chen, T. H., Li, S., Harris, K. A., Lünse, C. E., and Breaker, R. R., “New classes of self-cleaving ribozymes revealed by comparative genomics analysis.”, Nat Chem Biol, vol. 11, no. 8, pp. 606-10, 2015. [PubMed]
J. W. Nelson, Sudarsan, N., Phillips, G. E., Stav, S., Lünse, C. E., McCown, P. J., and Breaker, R. R., “Control of bacterial exoelectrogenesis by c-AMP-GMP.”, Proc Natl Acad Sci U S A, vol. 112, no. 17, pp. 5389-94, 2015. [PubMed]
J. W. Nelson, Plummer, M. S., Blount, K. F., Ames, T. D., and Breaker, R. R., “Small molecule fluoride toxicity agonists.”, Chem Biol, vol. 22, no. 4, pp. 527-34, 2015. [PubMed]

2014

R. R. Breaker and Joyce, G. F., “The Expanding View of RNA and DNA Function.”, Chem Biol, vol. 21, no. 9, pp. 1059-1065, 2014. [PubMed]
P. J. McCown, Liang, J. J., Weinberg, Z., and Breaker, R. R., “Structural, Functional, and Taxonomic Diversity of Three PreQ1 Riboswitch Classes.”, Chem Biol, vol. 21, no. 7, pp. 880-9, 2014. [PubMed]
J. W. Nelson, Zhou, Z., and Breaker, R. R., “Gramicidin D enhances the antibacterial activity of fluoride.”, Bioorg Med Chem Lett, vol. 24, no. 13, pp. 2969-71, 2014. [PubMed]
A. Roth, Weinberg, Z., G Y Chen, A., Kim, P. B., Ames, T. D., and Breaker, R. R., “A widespread self-cleaving ribozyme class is revealed by bioinformatics.”, Nat Chem Biol, vol. 10, no. 1, pp. 56-60, 2014. [PubMed]
K. Furukawa, Gu, H., and Breaker, R. R., “In Vitro Selection of Allosteric Ribozymes that Sense the Bacterial Second Messenger c-di-GMP.”, Methods Mol Biol, vol. 1111, pp. 209-20, 2014. [PubMed]

2013

S. Li, Smith, K. D., Davis, J. H., Gordon, P. B., Breaker, R. R., and Strobel, S. A., “Eukaryotic resistance to fluoride toxicity mediated by a widespread family of fluoride export proteins.”, Proc Natl Acad Sci U S A, vol. 110, no. 47, pp. 19018-23, 2013. [PubMed]
S. Li and Breaker, R. R., “Eukaryotic TPP riboswitch regulation of alternative splicing involving long-distance base pairing.”, Nucleic Acids Res, vol. 41, no. 5, pp. 3022-31, 2013. [PubMed]
H. Gu, Furukawa, K., Weinberg, Z., Berenson, D. F., and Breaker, R. R., “Small, highly active DNAs that hydrolyze DNA.”, J Am Chem Soc, vol. 135, no. 24, pp. 9121-9, 2013. [PubMed]
H. Gu and Breaker, R. R., “Production of single-stranded DNAs by self-cleavage of rolling-circle amplification products.”, Biotechniques, vol. 54, no. 6, pp. 337-43, 2013. [PubMed]
J. W. Nelson, Sudarsan, N., Furukawa, K., Weinberg, Z., Wang, J. X., and Breaker, R. R., “Riboswitches in eubacteria sense the second messenger c-di-AMP.”, Nat Chem Biol, vol. 9, no. 12, pp. 834-9, 2013. [PubMed]

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