2018

M. E. Sherlock, Sudarsan, N., Stav, S., and Breaker, R. R., “Tandem riboswitches form a natural Boolean logic gate to control purine metabolism in bacteria”, eLife, vol. 5, no. 7, 2018. [Link]
G. Mirihana-Arachchilage, Sherlock, M. E., Weinberg, Z., and Breaker, R. R., “SAM-VI RNAs selectively bind S-adenosylmethionine and exhibit similarities to SAM-III riboswitches”, RNA Biol, vol. 15, no. 3, 2018. [Link]

2017

S. Li and Breaker, R. R., “Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics”, BMC Genomics, vol. 18, no. 1, 2017. [Link]
Z. Weinberg, Lünse, C. E., Corbino, K., Ames, T. D., Nelson, J. W., Roth, A., Perkins, K., Sherlock, M. E., and Breaker, R. R., “Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions”, Nucleic Acids Research, 2017. [Link]
J. W. Nelson and Breaker, R. R., “The lost language of the RNA World”, Science Signaling, vol. 10, no. 483, 2017. [Link]
R. Nagdhi M, K, S., Wang, J. X., Wade, F., Breaker, R. R., and Perreault, J., “Search for 5'-leader regulatory RNA structures based on gene annotation aided by the RiboGap database”, Methods, 2017. [Link]
Z. Weinberg, Nelson, J. W., Lünse, C. E., Sherlock, M. E., and Breaker, R. R., “Bioinformatic analysis of riboswitch structures uncovers variant classes with altered ligand specificity”, Proc Natl Acad Sci USA, 2017. [Link]
R. R. Breaker, “Mechanistic Debris Generated by Twister Ribozymes”, ACS Chem Biol, 2017. [Link]
M. E. Sherlock and Breaker, R. R., “Biochemical Validation of a Third Guanidine Riboswitch Class in Bacteria”, Biochemistry, 2017. [Link]
M. E. Sherlock, Malkowski, S. N., and Breaker, R. R., “Biochemical Validation of a Second Guanidine Riboswitch Class in Bacteria”, Biochemistry, 2017. [Link]
P. J. McCown, Corbino, K. A., Stav, S., Sherlock, M. E., and Breaker, R. R., “Riboswitch Diversity and Distribution”, RNA, 2017. [Link]
R. R. Breaker, Atilho, R. M., Malkowski, S. N., Nelson, J. W., and Sherlock, M. E., “The Biology of Free Guanidine As Revealed by Riboswitches”, Biochemistry, 2017. [Link]

2016

S. Li, Hwang, X. Ying, Stav, S., and Breaker, R. R., “The yjdF riboswitch candidate regulates gene expression by binding diverse azaaromatic compounds.”, RNA, 2016. [PubMed]
J. W. Nelson, Atilho, R. M., Sherlock, M. E., Stockbridge, R. B., and Breaker, R. R., “Metabolism of Free Guanidine in Bacteria Is Regulated by a Widespread Riboswitch Class”, Mol Cell, 2016. [Link]
C. E. Lünse, Weinberg, Z., and Breaker, R. R., “Numerous small hammerhead ribozyme variants associated with Penelope-like retrotransposons cleave RNA as dimers”, RNA Biol, 2016. [Link]
K. M. Ruff, Muhamham, A., McCown, P. J., Breaker, R. R., and Strobel, S. A., “Singlet glycine riboswitches bind ligand as well as tandem riboswitches”, RNA, vol. 22, no. 11, p. 10, 2016. [Link]

2015

K. A. Harris, Lünse, C. E., Li, S., Brewer, K. I., and Breaker, R. R., “Biochemical analysis of pistol self-cleaving ribozymes.”, RNA, 2015. [PubMed]
S. Li, Lünse, C. E., Harris, K. A., and Breaker, R. R., “Biochemical analysis of hatchet self-cleaving ribozymes.”, RNA, 2015. [PubMed]
K. F. Blount, Megyola, C., Plummer, M., Osterman, D., O'Connell, T., Aristoff, P., Quinn, C., R Chrusciel, A., Poel, T. J., Schostarez, H. J., Stewart, C. A., Walker, D. P., Wuts, P. G. M., and Breaker, R. R., “Novel Riboswitch-Binding Flavin Analog That Protects Mice against Clostridium difficile Infection without Inhibiting Cecal Flora.”, Antimicrob Agents Chemother, vol. 59, no. 9, pp. 5736-46, 2015. [PubMed]
K. Furukawa, Ramesh, A., Zhou, Z., Weinberg, Z., Vallery, T., Winkler, W. C., and Breaker, R. R., “Bacterial riboswitches cooperatively bind ni(2+) or co(2+) ions and control expression of heavy metal transporters.”, Mol Cell, vol. 57, no. 6, pp. 1088-98, 2015. [PubMed]

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