2011

R. R. Breaker, “Prospects for riboswitch discovery and analysis.”, Mol Cell, vol. 43, no. 6, pp. 867-79, 2011. [PubMed]
A. G Y Chen, Sudarsan, N., and Breaker, R. R., “Mechanism for gene control by a natural allosteric group I ribozyme.”, RNA, vol. 17, no. 11, pp. 1967-72, 2011. [PubMed]
B. J. Parker, Moltke, I., Roth, A., Washietl, S., Wen, J., Kellis, M., Breaker, R., and Pedersen, J. Skou, “New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes.”, Genome Res, vol. 21, no. 11, pp. 1929-43, 2011. [PubMed]
J. Perreault, Weinberg, Z., Roth, A., Popescu, O., Chartrand, P., Ferbeyre, G., and Breaker, R. R., “Identification of hammerhead ribozymes in all domains of life reveals novel structural variations.”, PLoS Comput Biol, vol. 7, no. 5, p. e1002031, 2011. [PubMed]
T. D. Ames and Breaker, R. R., “Bacterial aptamers that selectively bind glutamine.”, RNA Biol, vol. 8, no. 1, pp. 82-9, 2011. [PubMed]
M. M. Meyer, Hammond, M. C., Salinas, Y., Roth, A., Sudarsan, N., and Breaker, R. R., “Challenges of ligand identification for riboswitch candidates.”, RNA Biol, vol. 8, no. 1, pp. 5-10, 2011. [PubMed]
K. F. Block, Puerta-Fernandez, E., Wallace, J. G., and Breaker, R. R., “Association of OLE RNA with bacterial membranes via an RNA-protein interaction.”, Mol Microbiol, vol. 79, no. 1, pp. 21-34, 2011. [PubMed]
J. G. Wallace and Breaker, R. R., “Improved genetic transformation methods for the model alkaliphile Bacillus halodurans C-125.”, Lett Appl Microbiol, vol. 52, no. 4, pp. 430-2, 2011. [PubMed]
P. J. McCown, Roth, A., and Breaker, R. R., “An expanded collection and refined consensus model of glmS ribozymes.”, RNA, vol. 17, no. 4, pp. 728-36, 2011. [PubMed]
Z. Weinberg and Breaker, R. R., “R2R--software to speed the depiction of aesthetic consensus RNA secondary structures.”, BMC Bioinformatics, vol. 12, p. 3, 2011. [PubMed]

2010

T. D. Ames, Rodionov, D. A., Weinberg, Z., and Breaker, R. R., “A eubacterial riboswitch class that senses the coenzyme tetrahydrofolate.”, Chem Biol, vol. 17, no. 7, pp. 681-5, 2010. [PubMed]
R. R. Breaker, “RNA switches out in the cold.”, Mol Cell, vol. 37, no. 1, pp. 1-2, 2010. [PubMed]
E. R. Lee, Baker, J. L., Weinberg, Z., Sudarsan, N., and Breaker, R. R., “An allosteric self-splicing ribozyme triggered by a bacterial second messenger.”, Science, vol. 329, no. 5993, pp. 845-8, 2010. [PubMed]
K. F. Block, Hammond, M. C., and Breaker, R. R., “Evidence for widespread gene control function by the ydaO riboswitch candidate.”, J Bacteriol, vol. 192, no. 15, pp. 3983-9, 2010. [PubMed]
Z. Weinberg, Wang, J. X., Bogue, J., Yang, J., Corbino, K., Moy, R. H., and Breaker, R. R., “Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes.”, Genome Biol, vol. 11, no. 3, p. R31, 2010. [PubMed]
K. F. Block and Breaker, R. R., “The large, noncoding OLE RNA is associated with membrane biochemistry”, Faseb Journal, 2010.
R. R. Breaker, “RNA Second Messengers and Riboswitches: Relics from the RNA World?”, Microbe, 2010. [Link]
T. D. Ames and Breaker, R. R., “Bacterial Riboswitch Discovery and Analysis”, in The Chemical Biology of Nucleic Acids, 2010. [Link]

2009

R. R. Breaker, “Riboswitches: from ancient gene-control systems to modern drug targets.”, Future Microbiol, vol. 4, no. 7, pp. 771-3, 2009. [PubMed]
K. H. Link and Breaker, R. R., “Engineering ligand-responsive gene-control elements: lessons learned from natural riboswitches.”, Gene Ther, vol. 16, no. 10, pp. 1189-201, 2009. [PubMed]

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